IL_5ZLU_077

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5ZLU|1|V|G|801, 5ZLU|1|V|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_077 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.1563

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

5ZLU|1|V|G|674
5ZLU|1|V|A|675
5ZLU|1|V|A|676
5ZLU|1|V|A|677
5ZLU|1|V|C|678
*
5ZLU|1|V|G|799
5ZLU|1|V|A|800
5ZLU|1|V|G|801
5ZLU|1|V|A|802
5ZLU|1|V|U|803
5ZLU|1|V|A|804
5ZLU|1|V|G|805
5ZLU|1|V|C|806

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L4

Chain i

50S ribosomal protein L15