IL_5ZLU_115

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5ZLU|1|V|G|1801, 5ZLU|1|V|G|1816, 5ZLU|1|V|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_115 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1791

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5ZLU|1|V|U|1798
5ZLU|1|V|G|1799
5ZLU|1|V|C|1800
5ZLU|1|V|G|1801
5ZLU|1|V|A|1802
5ZLU|1|V|A|1803
5ZLU|1|V|C|1804
*
5ZLU|1|V|G|1813
5ZLU|1|V|G|1814
5ZLU|1|V|A|1815
5ZLU|1|V|G|1816
5ZLU|1|V|G|1817
5ZLU|1|V|U|1818
5ZLU|1|V|A|1819
5ZLU|1|V|U|1820
5ZLU|1|V|A|1821

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain G

Small subunit ribosomal RNA; SSU rRNA

Chain Z

50S ribosomal protein L2