IL_5ZLU_138

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5ZLU|1|V|G|2576, 5ZLU|1|V|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_138 not in the Motif Atlas

Geometric match to IL_7A0S_089

Geometric discrepancy: 0.1655

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5ZLU|1|V|C|2510
5ZLU|1|V|U|2511
5ZLU|1|V|C|2512
*
5ZLU|1|V|G|2574
5ZLU|1|V|C|2575
5ZLU|1|V|G|2576
5ZLU|1|V|A|2577
5ZLU|1|V|G|2578

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain EE

Macrolide efflux protein

Chain a

50S ribosomal protein L3

Chain x

50S ribosomal protein L32