IL_5ZLU_151

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCG*CAGC

Length

7 nucleotides

Bulged bases

5ZLU|1|X|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_151 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.388

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5ZLU|1|X|G|16
5ZLU|1|X|C|17
5ZLU|1|X|G|18
*
5ZLU|1|X|C|65
5ZLU|1|X|A|66
5ZLU|1|X|G|67
5ZLU|1|X|C|68

Current chains

Chain X

5S ribosomal RNA

Nearby chains

Chain V

Large subunit ribosomal RNA; LSU rRNA

Chain l

50S ribosomal protein L18

Chain s

50S ribosomal protein L25