IL_5ZLU_159

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCGC*GUGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_159 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3955

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5ZLU|1|G|C|186
5ZLU|1|G|C|186|||A
5ZLU|1|G|C|186|||B
5ZLU|1|G|G|186|||C
5ZLU|1|G|C|186|||D
*
5ZLU|1|G|G|191|||C
5ZLU|1|G|U|191|||D
5ZLU|1|G|G|191|||E
5ZLU|1|G|U|191|||F
5ZLU|1|G|G|191

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S20