IL_5ZLU_221

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_221 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2565

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5ZLU|1|V|U|1851
5ZLU|1|V|C|1852
5ZLU|1|V|A|1853
5ZLU|1|V|A|1854
5ZLU|1|V|G|1855
*
5ZLU|1|V|C|1887
5ZLU|1|V|G|1888
5ZLU|1|V|A|1889
5ZLU|1|V|A|1890
5ZLU|1|V|G|1891

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain EE

Macrolide efflux protein

Chain Z

50S ribosomal protein L2

Chain w

50S ribosomal protein L31