IL_5ZWM_010

3D structure

PDB id

5ZWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZWM_010 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2694

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5ZWM|1|G|C|491
5ZWM|1|G|U|492
5ZWM|1|G|A|493
*
5ZWM|1|H|U|42
5ZWM|1|H|G|43

Current chains

Chain G

Pre-mRNA-BPS

Chain H

U2 snRNA

Nearby chains

Chain 1

U2 snRNP component HSH155

Chain v

Pre-mRNA-splicing factor PRP11