IL_5ZWO_008

3D structure

PDB id

5ZWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZWO_008 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2745

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5ZWO|1|G|C|491
5ZWO|1|G|U|492
5ZWO|1|G|A|493
*
5ZWO|1|H|U|42
5ZWO|1|H|G|43

Current chains

Chain G

Pre-mRNA

Chain H

U2 snRNA

Nearby chains

Chain 1

U2 snRNP component HSH155

Chain v

Pre-mRNA-splicing factor PRP11