IL_6AEG_001

3D structure

PDB id

6AEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of xCas9 in complex with sgRNA and target DNA (GAT PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AGAG*CAAGUU

Length

10 nucleotides

Bulged bases

6AEG|1|A|A|28, 6AEG|1|A|U|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.6

Basepair signature

cWW-cWW-L-R-cWW-L

Number of instances in this motif group

14

Unit IDs

6AEG|1|A|A|26
6AEG|1|A|G|27
6AEG|1|A|A|28
6AEG|1|A|G|29
*
6AEG|1|A|C|40
6AEG|1|A|A|41
6AEG|1|A|A|42
6AEG|1|A|G|43
6AEG|1|A|U|44
6AEG|1|A|U|45

Current chains

Chain A

RNA (95-MER)

Nearby chains

Chain B

DNA nuclease