Motif IL_45612.6 Version IL_45612.6 of this group appears in releases 3.89 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 5-6 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8KAL_008 | 8KAL | 0.1525 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | ncWW | cWW |
2 | IL_6AEG_001 | 6AEG | 0.0916 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
3 | IL_5VW1_001 | 5VW1 | 0.0827 | 2 | C | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
4 | IL_7Z4D_001 | 7Z4D | 0.0933 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
5 | IL_7ZO1_001 | 7ZO1 | 0.0462 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
6 | IL_7QQP_001 | 7QQP | 0.0435 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
7 | IL_7QQX_001 | 7QQX | 0.0000 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
8 | IL_7QR0_001 | 7QR0 | 0.0355 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
9 | IL_5FQ5_001 | 5FQ5 | 0.0403 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
10 | IL_5B2T_001 | 5B2T | 0.0410 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
11 | IL_7QR8_001 | 7QR8 | 0.0485 | 2 | A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
12 | IL_4ZT0_003 | 4ZT0 | 0.1126 | 2 | D | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
13 | IL_5F9R_001 | 5F9R | 0.1207 | 2 | A | tracrRNA | C | 58 | A | 59 | A | 60 | G | 61 | U | 63 | * | A | 26 | G | 27 | G | 29 | cWW | cWW |
14 | IL_8KAH_002 | 8KAH | 0.1600 | 2 | I+A | tracrRNA | C | 40 | A | 41 | A | 42 | G | 43 | U | 45 | * | A | 26 | G | 27 | G | 29 | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAGUU*AGAG | 14 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAGU*GA | 14 |
- Annotations
-
- (14)
- Basepair signature
- cWW-cWW-L-R-cWW-L
- Heat map statistics
- Min 0.04 | Avg 0.10 | Max 0.20
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