IL_6AHD_006
3D structure
- PDB id
- 6AHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUAC*GAGCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AHD_006 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.296
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6AHD|1|F|G|38
6AHD|1|F|A|39
6AHD|1|F|U|40
6AHD|1|F|A|41
6AHD|1|F|C|42
*
6AHD|1|G|G|5
6AHD|1|G|A|6
6AHD|1|G|G|7
6AHD|1|G|C|8
6AHD|1|G|C|9
Current chains
- Chain F
- U6snRNA
- Chain G
- pre-mRNA
Nearby chains
- Chain 8
- Zinc finger matrin-type protein 2
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain A0
- Ubiquitin-like protein 5
- Chain N
- Pre-mRNA-processing factor 6
- Chain O
- Thioredoxin-like protein 4A
- Chain X
- WW domain-binding protein 4
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