IL_6ASO_001
3D structure
- PDB id
- 6ASO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.71 Å
Loop
- Sequence
- GAAACAAUACAGAGAUGAUCA*UUUAC
- Length
- 26 nucleotides
- Bulged bases
- 6ASO|1|I|A|49, 6ASO|1|I|U|54, 6ASO|1|I|G|55
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34739.3
- Basepair signature
- cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 3
Unit IDs
6ASO|1|I|G|39
6ASO|1|I|A|40
6ASO|1|I|A|41
6ASO|1|I|A|42
6ASO|1|I|C|43
6ASO|1|I|A|44
6ASO|1|I|A|45
6ASO|1|I|U|46
6ASO|1|I|A|47
6ASO|1|I|C|48
6ASO|1|I|A|49
6ASO|1|I|G|50
6ASO|1|I|A|51
6ASO|1|I|G|52
6ASO|1|I|A|53
6ASO|1|I|U|54
6ASO|1|I|G|55
6ASO|1|I|A|56
6ASO|1|I|U|57
6ASO|1|I|C|58
6ASO|1|I|A|59
*
6ASO|1|I|U|88
6ASO|1|I|U|89
6ASO|1|I|U|90
6ASO|1|I|A|91
6ASO|1|I|C|92
Current chains
- Chain I
- Saccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequence
Nearby chains
- Chain A
- U4/U6 snRNA-associated-splicing factor PRP24
Coloring options: