IL_6AWB_057

3D structure

PDB id

6AWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWB_057 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.3305

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6AWB|1|A|C|1303
6AWB|1|A|G|1304
6AWB|1|A|G|1305
6AWB|1|A|A|1306
6AWB|1|A|U|1307
6AWB|1|A|U|1308
*
6AWB|1|A|A|1329
6AWB|1|A|U|1330
6AWB|1|A|G|1331
6AWB|1|A|A|1332
6AWB|1|A|A|1333
6AWB|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S13

Chain V

30S ribosomal protein S19