IL_6AWC_020

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWC_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.4187

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6AWC|1|A|U|409
6AWC|1|A|G|410
6AWC|1|A|A|411
6AWC|1|A|A|412
6AWC|1|A|G|413
6AWC|1|A|A|414
6AWC|1|A|A|415
6AWC|1|A|G|416
*
6AWC|1|A|U|427
6AWC|1|A|G|428
6AWC|1|A|U|429
6AWC|1|A|A|430
6AWC|1|A|A|431
6AWC|1|A|A|432
6AWC|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S4