IL_6AWD_010

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_010 not in the Motif Atlas

Homologous match to IL_6CZR_120

Geometric discrepancy: 0.3348

The information below is about IL_6CZR_120

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

6AWD|1|A|C|132
6AWD|1|A|U|133
6AWD|1|A|G|134
6AWD|1|A|C|135
6AWD|1|A|C|136
*
6AWD|1|A|G|227
6AWD|1|A|A|228
6AWD|1|A|U|229
6AWD|1|A|G|230

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16

Chain W

30S ribosomal protein S20