IL_6AWD_018

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_018 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.2215

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6AWD|1|A|A|371
6AWD|1|A|C|372
6AWD|1|A|A|373
6AWD|1|A|A|374
6AWD|1|A|U|375
*
6AWD|1|A|A|389
6AWD|1|A|U|390

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16