IL_6AWD_020

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.39

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6AWD|1|A|U|409
6AWD|1|A|G|410
6AWD|1|A|A|411
6AWD|1|A|A|412
6AWD|1|A|G|413
6AWD|1|A|A|414
6AWD|1|A|A|415
6AWD|1|A|G|416
*
6AWD|1|A|U|427
6AWD|1|A|G|428
6AWD|1|A|U|429
6AWD|1|A|A|430
6AWD|1|A|A|431
6AWD|1|A|A|432
6AWD|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S4