IL_6AWD_022

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6AWD|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.2782

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6AWD|1|A|G|446
6AWD|1|A|G|447
6AWD|1|A|A|448
6AWD|1|A|G|449
6AWD|1|A|G|450
*
6AWD|1|A|C|483
6AWD|1|A|G|484
6AWD|1|A|U|485
6AWD|1|A|U|486
6AWD|1|A|A|487
6AWD|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S4

Chain S

30S ribosomal protein S16