IL_6AWD_029

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_029 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.4292

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

6AWD|1|A|G|597
6AWD|1|A|U|598
*
6AWD|1|A|A|640
6AWD|1|A|U|641
6AWD|1|A|A|642
6AWD|1|A|C|643

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S8

Chain T

30S ribosomal protein S17