IL_6AWD_038

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6AWD|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_038 not in the Motif Atlas

Geometric match to IL_6CZR_122

Geometric discrepancy: 0.3171

The information below is about IL_6CZR_122

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

6AWD|1|A|G|922
6AWD|1|A|A|923
6AWD|1|A|C|924
*
6AWD|1|A|G|1392
6AWD|1|A|U|1393
6AWD|1|A|A|1394
6AWD|1|A|C|1395

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S5