IL_6AWD_056

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_056 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3552

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6AWD|1|A|C|1303
6AWD|1|A|G|1304
6AWD|1|A|G|1305
6AWD|1|A|A|1306
6AWD|1|A|U|1307
6AWD|1|A|U|1308
*
6AWD|1|A|A|1329
6AWD|1|A|U|1330
6AWD|1|A|G|1331
6AWD|1|A|A|1332
6AWD|1|A|A|1333
6AWD|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S13

Chain V

30S ribosomal protein S19