IL_6AZ1_003

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_003 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1094

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6AZ1|1|1|U|27
6AZ1|1|1|A2M|28
6AZ1|1|1|U|29
*
6AZ1|1|1|G|646
6AZ1|1|1|U|647
6AZ1|1|1|A|648

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain D

ribosomal protein S4

Chain P

ribosomal protein S12