IL_6AZ1_023

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

6AZ1|1|1|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_023 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.1551

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6AZ1|1|1|U|490
6AZ1|1|1|G|491
*
6AZ1|1|1|U|506
6AZ1|1|1|G|507
6AZ1|1|1|A|508

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain D

ribosomal protein S4

Chain E

ribosomal protein S4e

Chain Z

ribosomal protein S24e