IL_6AZ1_024

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CAAUAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_024 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.2485

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6AZ1|1|1|G|561
6AZ1|1|1|G|562
*
6AZ1|1|1|C|579
6AZ1|1|1|A|580
6AZ1|1|1|A|581
6AZ1|1|1|U|582
6AZ1|1|1|A|583
6AZ1|1|1|U|584
6AZ1|1|1|C|585

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain D

ribosomal protein S4

Chain Z

ribosomal protein S24e