IL_6AZ1_029
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGGCUG*UGCAGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_029 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.2559
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|G|690
6AZ1|1|1|G|691
6AZ1|1|1|G|692
6AZ1|1|1|C|693
6AZ1|1|1|U|694
6AZ1|1|1|G|695
*
6AZ1|1|1|U|750
6AZ1|1|1|G|751
6AZ1|1|1|C|752
6AZ1|1|1|A|753
6AZ1|1|1|G|754
6AZ1|1|1|C|755
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain I
- ribosomal protein S7e
- Chain J
- ribosomal protein S8
Coloring options: