IL_6AZ1_035

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CCU

Length

5 nucleotides

Bulged bases

6AZ1|1|1|C|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_035 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.2056

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6AZ1|1|1|G|1114
6AZ1|1|1|G|1115
*
6AZ1|1|1|C|1205
6AZ1|1|1|C|1206
6AZ1|1|1|U|1207

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain I

ribosomal protein S7e

Chain T

ribosomal protein S15

Chain c

ribosomal protein S27e