IL_6AZ1_041

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_041 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.1208

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6AZ1|1|1|G|1232
6AZ1|1|1|A|1233
6AZ1|1|1|G|1234
6AZ1|1|1|A|1235
6AZ1|1|1|U|1236
6AZ1|1|1|C|1237
*
6AZ1|1|1|G|1261
6AZ1|1|1|U|1262
6AZ1|1|1|C|1263

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain O

ribosomal protein S11

Chain b

ribosomal protein S26e