IL_6AZ1_044
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_044 not in the Motif Atlas
- Geometric match to IL_5VCI_002
- Geometric discrepancy: 0.1475
- The information below is about IL_5VCI_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6AZ1|1|1|U|1291
6AZ1|1|1|U|1292
6AZ1|1|1|G|1293
*
6AZ1|1|1|C|1421
6AZ1|1|1|U|1422
6AZ1|1|1|G|1423
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain A
- Ribosomal protein s1e
- Chain T
- ribosomal protein S15
- Chain b
- ribosomal protein S26e
- Chain c
- ribosomal protein S27e
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