IL_6AZ1_048

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGA*U(OMU)G

Length

7 nucleotides

Bulged bases

6AZ1|1|1|G|1502

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_048 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.2285

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6AZ1|1|1|C|1500
6AZ1|1|1|G|1501
6AZ1|1|1|G|1502
6AZ1|1|1|A|1503
*
6AZ1|1|1|U|2047
6AZ1|1|1|OMU|2048
6AZ1|1|1|G|2049

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain 5

mRNA

Chain F

ribosomal protein S5

Chain b

ribosomal protein S26e