IL_6AZ1_052
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_052 not in the Motif Atlas
- Homologous match to IL_4V88_446
- Geometric discrepancy: 0.1223
- The information below is about IL_4V88_446
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6AZ1|1|1|A|1565
6AZ1|1|1|U|1566
6AZ1|1|1|C|1567
*
6AZ1|1|1|G|1849
6AZ1|1|1|U|1850
6AZ1|1|1|U|1851
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain N
- ribosomal protein S10e
- Chain S
- ribosomal protein S14
- Chain W
- ribosomal protein S19
- Chain f
- ribosomal protein S31e
Coloring options: