IL_6AZ1_053

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUGAGGA*UUCC

Length

12 nucleotides

Bulged bases

6AZ1|1|1|A|1579, 6AZ1|1|1|G|1580, 6AZ1|1|1|G|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AZ1|1|1|G|1575
6AZ1|1|1|A|1576
6AZ1|1|1|U|1577
6AZ1|1|1|G|1578
6AZ1|1|1|A|1579
6AZ1|1|1|G|1580
6AZ1|1|1|G|1581
6AZ1|1|1|A|1582
*
6AZ1|1|1|U|1609
6AZ1|1|1|U|1610
6AZ1|1|1|C|1611
6AZ1|1|1|C|1612

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain N

ribosomal protein S10e

Chain Q

ribosomal protein S12e

Chain f

ribosomal protein S31e