IL_6AZ1_058
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCG*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 6AZ1|1|1|A|1828
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_058 not in the Motif Atlas
- Geometric match to IL_4E59_001
- Geometric discrepancy: 0.1159
- The information below is about IL_4E59_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6AZ1|1|1|C|1631
6AZ1|1|1|C|1632
6AZ1|1|1|G|1633
*
6AZ1|1|1|C|1827
6AZ1|1|1|A|1828
6AZ1|1|1|OMG|1829
6AZ1|1|1|G|1830
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 5
- mRNA
- Chain C
- ribosomal protein S3
- Chain F
- ribosomal protein S5
- Chain L
- ribosomal protein S9
- Chain M
- ribosomal protein S10
- Chain S
- ribosomal protein S14
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