IL_6AZ1_063

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CGUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_063 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.2671

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6AZ1|1|1|C|1705
6AZ1|1|1|A|1706
6AZ1|1|1|G|1707
*
6AZ1|1|1|C|1765
6AZ1|1|1|G|1767
6AZ1|1|1|U|1768
6AZ1|1|1|C|1769
6AZ1|1|1|G|1770

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain L

ribosomal protein S9

Chain X

ribosomal protein S19e