IL_6AZ1_065

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

6AZ1|1|1|A|1949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_065 not in the Motif Atlas

Geometric match to IL_4AOB_001

Geometric discrepancy: 0.3366

The information below is about IL_4AOB_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6AZ1|1|1|C|1877
6AZ1|1|1|A|1878
*
6AZ1|1|1|U|1948
6AZ1|1|1|A|1949
6AZ1|1|1|G|1950

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain L

ribosomal protein S9

Chain R

ribosomal protein S13

Chain X

ribosomal protein S19e

Chain a

ribosomal protein S25e