IL_6AZ1_067
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGGACC*GCGCAAC
- Length
- 13 nucleotides
- Bulged bases
- 6AZ1|1|1|C|1988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_067 not in the Motif Atlas
- Homologous match to IL_4V88_462
- Geometric discrepancy: 0.1377
- The information below is about IL_4V88_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6AZ1|1|1|G|1959
6AZ1|1|1|G|1960
6AZ1|1|1|G|1961
6AZ1|1|1|A|1962
6AZ1|1|1|C|1963
6AZ1|1|1|C|1964
*
6AZ1|1|1|G|1985
6AZ1|1|1|C|1986
6AZ1|1|1|G|1987
6AZ1|1|1|C|1988
6AZ1|1|1|A|1989
6AZ1|1|1|A|1990
6AZ1|1|1|C|1991
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain R
- ribosomal protein S13
- Chain X
- ribosomal protein S19e
Coloring options: