IL_6AZ1_068

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGGA*UGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_068 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.1779

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6AZ1|1|1|A|1966
6AZ1|1|1|G|1967
6AZ1|1|1|G|1968
6AZ1|1|1|A|1969
*
6AZ1|1|1|U|1980
6AZ1|1|1|G|1981
6AZ1|1|1|G|1982
6AZ1|1|1|U|1983

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain R

ribosomal protein S13

Chain W

ribosomal protein S19

Chain X

ribosomal protein S19e