IL_6AZ1_070

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(4OC)C(5MC)G*CGUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6AZ1|1|1|G|2058
6AZ1|1|1|4OC|2059
6AZ1|1|1|C|2060
6AZ1|1|1|5MC|2061
6AZ1|1|1|G|2062
*
6AZ1|1|1|C|2162
6AZ1|1|1|G|2163
6AZ1|1|1|U|2164
6AZ1|1|1|A|2165
6AZ1|1|1|A|2166
6AZ1|1|1|C|2167

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 5

mRNA