IL_6AZ1_078

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_078 not in the Motif Atlas

Geometric match to IL_1ZX7_004

Geometric discrepancy: 0.1434

The information below is about IL_1ZX7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6AZ1|1|1|A|2095
6AZ1|1|1|U|2096
6AZ1|1|1|C|2097
*
6AZ1|1|1|G|2126
6AZ1|1|1|U|2127
6AZ1|1|1|U|2128

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain G

ribosomal protein S6e

Chain K

ribosomal protein S8e