IL_6AZ1_081

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_081 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.0909

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

6AZ1|1|1|C|486
6AZ1|1|1|C|487
6AZ1|1|1|A|488
6AZ1|1|1|A|489
6AZ1|1|1|U|490
*
6AZ1|1|1|A|508
6AZ1|1|1|OMG|509

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain D

ribosomal protein S4

Chain E

ribosomal protein S4e

Chain Z

ribosomal protein S24e