IL_6AZ1_091

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CG*CA(OMG)

Length

5 nucleotides

Bulged bases

6AZ1|1|1|A|1828

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_091 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.1858

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

6AZ1|1|1|C|1632
6AZ1|1|1|G|1633
*
6AZ1|1|1|C|1827
6AZ1|1|1|A|1828
6AZ1|1|1|OMG|1829

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 5

mRNA

Chain C

ribosomal protein S3

Chain F

ribosomal protein S5

Chain L

ribosomal protein S9

Chain M

ribosomal protein S10

Chain S

ribosomal protein S14