IL_6B4V_009

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGACAAC*GCUAAUCCC

Length

17 nucleotides

Bulged bases

6B4V|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|A|G|146
6B4V|1|A|G|147
6B4V|1|A|G|148
6B4V|1|A|A|149
6B4V|1|A|C|150
6B4V|1|A|A|151
6B4V|1|A|A|152
6B4V|1|A|C|153
*
6B4V|1|A|G|168
6B4V|1|A|C|169
6B4V|1|A|U|170
6B4V|1|A|A|171
6B4V|1|A|A|172
6B4V|1|A|U|173
6B4V|1|A|C|174
6B4V|1|A|C|175
6B4V|1|A|C|176

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S20