IL_6B4V_015

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

6B4V|1|A|G|388

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_015 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.1902

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6B4V|1|A|U|375
6B4V|1|A|G|376
6B4V|1|A|G|377
*
6B4V|1|A|C|386
6B4V|1|A|U|387
6B4V|1|A|G|388
6B4V|1|A|A|389

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain YA

30S ribosomal protein S16