IL_6B4V_036

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_036 not in the Motif Atlas

Homologous match to IL_5J7L_042

Geometric discrepancy: 0.2005

The information below is about IL_5J7L_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6B4V|1|A|G|953
6B4V|1|A|G|954
*
6B4V|1|A|C|1226
6B4V|1|A|A|1227
6B4V|1|A|C|1228

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S19

Chain IA

Transfer RNA; tRNA

Chain JA

Peptide chain release factor 1

Chain VA

30S ribosomal protein S13