IL_6B4V_114

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAGCCC*GGGUGACAAC

Length

18 nucleotides

Bulged bases

6B4V|1|B|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|B|G|1526
6B4V|1|B|G|1527
6B4V|1|B|A|1528
6B4V|1|B|A|1529
6B4V|1|B|G|1530
6B4V|1|B|C|1531
6B4V|1|B|C|1532
6B4V|1|B|C|1533
*
6B4V|1|B|G|1538
6B4V|1|B|G|1539
6B4V|1|B|G|1540
6B4V|1|B|U|1541
6B4V|1|B|G|1542
6B4V|1|B|A|1543
6B4V|1|B|C|1544
6B4V|1|B|A|1545
6B4V|1|B|A|1546
6B4V|1|B|C|1546|||B

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17