IL_6B4V_159

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAG*CGAGG

Length

25 nucleotides

Bulged bases

6B4V|1|B|A|2790, 6B4V|1|B|U|2797, 6B4V|1|B|C|2798, 6B4V|1|B|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6B4V|1|B|C|2789
6B4V|1|B|A|2790
6B4V|1|B|C|2791
6B4V|1|B|G|2792
6B4V|1|B|G|2793
6B4V|1|B|C|2794
6B4V|1|B|G|2795
6B4V|1|B|U|2797
6B4V|1|B|C|2798
6B4V|1|B|A|2799
6B4V|1|B|A|2801
6B4V|1|B|G|2802
6B4V|1|B|C|2803
6B4V|1|B|C|2804
6B4V|1|B|G|2805
6B4V|1|B|G|2807
6B4V|1|B|U|2808
6B4V|1|B|A|2809
6B4V|1|B|A|2810
6B4V|1|B|G|2811
*
6B4V|1|B|C|2889
6B4V|1|B|G|2891
6B4V|1|B|A|2892
6B4V|1|B|G|2893
6B4V|1|B|G|2894

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L3