IL_6B4V_174

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6B4V|1|EB|G|129|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_174 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1109

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6B4V|1|EB|U|129|||A
6B4V|1|EB|G|129|||B
6B4V|1|EB|A|130
6B4V|1|EB|C|131
*
6B4V|1|EB|G|231
6B4V|1|EB|G|232

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S16

Chain DD

30S ribosomal protein S17

Chain GD

30S ribosomal protein S20