IL_6B4V_175

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_175 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.116

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6B4V|1|EB|C|132
6B4V|1|EB|U|133
6B4V|1|EB|A|134
6B4V|1|EB|C|135
6B4V|1|EB|C|136
*
6B4V|1|EB|G|227
6B4V|1|EB|A|228
6B4V|1|EB|U|229
6B4V|1|EB|G|230

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S16

Chain GD

30S ribosomal protein S20