IL_6B4V_183

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAGAAGC*GUGUAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_183 not in the Motif Atlas

Homologous match to IL_6CZR_129

Geometric discrepancy: 0.1866

The information below is about IL_6CZR_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58819.1

Basepair signature

cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6B4V|1|EB|G|409
6B4V|1|EB|G|410
6B4V|1|EB|A|411
6B4V|1|EB|A|412
6B4V|1|EB|G|413
6B4V|1|EB|A|414
6B4V|1|EB|A|415
6B4V|1|EB|G|416
6B4V|1|EB|C|417
*
6B4V|1|EB|G|426
6B4V|1|EB|U|427
6B4V|1|EB|G|428
6B4V|1|EB|U|429
6B4V|1|EB|A|430
6B4V|1|EB|A|431
6B4V|1|EB|A|432
6B4V|1|EB|C|433

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain QC

30S ribosomal protein S4