IL_6B4V_198

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_198 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1138

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6B4V|1|EB|C|779
6B4V|1|EB|A|780
6B4V|1|EB|A|781
6B4V|1|EB|A|782
6B4V|1|EB|C|783
*
6B4V|1|EB|G|799
6B4V|1|EB|G|800
6B4V|1|EB|U|801
6B4V|1|EB|A|802
6B4V|1|EB|G|803

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain FB

Large subunit ribosomal RNA; LSU rRNA

Chain XC

30S ribosomal protein S11