IL_6B4V_208

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

6B4V|1|EB|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_208 not in the Motif Atlas

Geometric match to IL_4V9F_039

Geometric discrepancy: 0.3331

The information below is about IL_4V9F_039

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6B4V|1|EB|C|1060
6B4V|1|EB|G|1061
*
6B4V|1|EB|C|1195
6B4V|1|EB|U|1196
6B4V|1|EB|G|1197

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S14 type Z

Chain LC

mRNA

Chain NC

Peptide chain release factor 1

Chain PC

30S ribosomal protein S3

Chain RC

30S ribosomal protein S5

Chain VC

30S ribosomal protein S9

Chain WC

30S ribosomal protein S10